AP Syllabus focus:
‘Core metabolic pathways like glycolysis and oxidative phosphorylation are conserved across all domains, supporting common ancestry.’
Organisms differ widely, yet many use the same foundational chemical routes to capture and store energy. Studying these shared pathways shows how evolution preserves effective solutions, providing strong evidence that life descends from common ancestors.
What “conserved pathways” reveal
Conserved metabolic pathways are sets of chemical reactions found with similar overall structure across diverse organisms. Their persistence suggests they arose early and were retained because they reliably support cellular survival.
Glycolysis appears in Bacteria, Archaea, and Eukarya as a broadly similar route for extracting energy from sugars.

Overview diagram of glycolysis showing the 10 reaction steps from glucose to pyruvate. It highlights where ATP is consumed and generated (substrate-level phosphorylation) and where NADH is produced, making the pathway’s conserved “logic” easy to track across organisms. Source
Oxidative phosphorylation uses membrane-bound electron transport and ATP synthase to make ATP in many lineages.

Electron transport chain diagram across the inner mitochondrial membrane showing electron flow from NADH/FADH through complexes I–IV to oxygen, coupled to proton pumping. The resulting H gradient is depicted driving ATP synthase to produce ATP, linking redox reactions to chemiosmotic ATP generation. Source
Because these pathways are central to energy processing, major changes are often harmful; evolution tends to modify details while keeping the core framework.
Common ancestry as the explanation for shared core metabolism
Common ancestry: The idea that different species descend from shared ancestral populations, explaining similarities that are inherited rather than independently invented.
Conservation of glycolysis and oxidative phosphorylation supports common ancestry because:
The same overall pathway “logic” (a sequence of linked reactions that capture energy stepwise) is widespread across all domains.
Many corresponding enzymes perform comparable functions in different organisms, implying inheritance with modification.
The universality of ATP production strategies suggests early life converged on effective mechanisms and passed them on.
What is conserved: pathway function, order, and molecular machinery
Conservation is not absolute identity. What typically remains similar across domains includes:
Core purpose: capturing free energy and storing it as ATP
Sequential organisation: products of one step serve as substrates for the next, enabling control and efficient energy transfer
Key protein complexes: especially ATP synthase, which is widely shared and recognisably related across taxa
At the same time, organisms show variation that still fits a shared ancestry model:
Isozymes (different versions of enzymes) can catalyse the same step with altered kinetics.
Some steps may be bypassed, reversed, or replaced by alternatives, especially in specialised environments.
The cellular location of oxidative phosphorylation differs by cell type (membrane systems differ), while the underlying chemiosmotic strategy remains comparable.
Evidence students should recognise
AP Biology commonly treats conserved pathways as evidence by combining biochemical, genetic, and evolutionary reasoning.
Biochemical and structural similarities
Similar substrates and products at major checkpoints across diverse taxa
Shared reliance on universal carriers (for example, NADH/NAD⁺ and related electron carriers) to move electrons in energy transformations
Conserved motifs and structural features in enzymes and complexes (especially those central to ATP synthesis)
Genetic evidence (genes reflect pathway history)
Genes encoding metabolic enzymes often show sequence homology across domains, consistent with descent from ancestral genes.
Comparable gene families suggest gene duplication and divergence built complexity while preserving original function.
Regulatory differences can evolve without replacing the underlying pathway, allowing conservation of core metabolism alongside adaptation.
Why conservation matters for evolution and classification
Because these pathways are ancient and essential, they provide a biochemical “throughline” connecting all life:
Shared energy pathways support the idea that early cells established a common energy toolkit.
Differences in pathway variants can help infer evolutionary relationships while still recognising a shared origin.
Conservation highlights how evolution is both innovative and constrained: selection can strongly favour keeping effective solutions to universal problems like ATP production.
Important caveats when interpreting conservation
Conserved metabolism is strong evidence, but interpretation should be careful:
Similarity can reflect functional constraint: essential processes change slowly because many mutations reduce fitness.
Some similarities may be shaped by convergent pressures (organisms facing similar energy challenges), even though deep conservation across all domains is most parsimoniously explained by inheritance.
Horizontal movement of genes in microbes can complicate “tree-like” patterns, yet the broad, cross-domain persistence of core energy strategies still supports a very early origin.
FAQ
ATP is chemically stable enough to persist in water yet reactive enough to transfer phosphate groups efficiently.
Its hydrolysis can be tightly coupled to many cellular reactions, making it a flexible, general-purpose energy currency.
They compare multiple lines of evidence, especially:
sequence similarity across many genes in the pathway
shared unique structural motifs in enzymes
congruent phylogenetic patterns across different pathway components
Convergence is less likely to reproduce many matching molecular details.
In microbes, genes for parts of energy metabolism can move between species, especially if they provide an advantage in a niche.
This can make unrelated organisms appear biochemically similar, so pathway evidence is strongest when supported by broader genomic data.
If an environment supplies key intermediates or lacks certain resources, selection may favour losing or altering steps.
Streamlining can reduce energy costs while still retaining the most essential conserved reactions.
They look for the most widely distributed, deeply conserved enzymes and infer which reactions likely existed in ancestral cells.
Comparing conserved components across domains helps identify ancient biochemical capabilities even when fossils are absent.
Practice Questions
Explain how the presence of glycolysis in Bacteria, Archaea, and Eukarya supports common ancestry. (2 marks)
Identifies that glycolysis is conserved/shared across all domains (1)
Links shared conservation to inheritance from an early common ancestor rather than independent invention (1)
Describe how conserved features of oxidative phosphorylation can be used as evidence for common ancestry, and discuss two limitations of using metabolic pathways alone to infer evolutionary relationships. (6 marks)
States that oxidative phosphorylation (or ATP synthase/ETC-based ATP production) is found across diverse taxa (1)
Explains that shared core mechanism/organisation suggests an early origin and inheritance (1)
Refers to conserved enzymes/protein complexes or genetic homology supporting descent with modification (1)
Limitation: functional constraint can preserve similarity even when lineages diverge greatly (1)
Limitation: horizontal gene transfer can obscure true lineage relationships, especially in prokaryotes (1)
Limitation: convergent evolution/analogous solutions could produce partial similarity in some components (1)
