AP Syllabus focus:
‘DNA replication is a semiconservative process that ensures continuity of hereditary information by synthesizing new DNA strands in the 5? to 3? direction.’
DNA replication is the cellular process that copies the genome before cell division. Understanding what “semiconservative” means and why synthesis proceeds only in one direction is essential for explaining how genetic information is accurately transmitted.
Core purpose of DNA replication
DNA replication maintains continuity of hereditary information by producing two DNA molecules that can be passed to daughter cells. High fidelity matters because most cells must preserve the same genetic instructions over many generations of cell division.
Semiconservative replication
Replication uses each original strand as a template to build a new complementary strand.

Semiconservative DNA replication: the two parental strands separate and each serves as a template for synthesis of a complementary new strand. The color-coding highlights that each daughter DNA molecule contains one original (parental) strand paired with one newly synthesized strand, preserving base-sequence information through copying. Source
Semiconservative replication: A DNA replication mechanism in which each daughter DNA molecule contains one original (parental) strand and one newly synthesised strand.
This model explains how base pairing allows copying: if one strand carries a sequence, the complementary strand can be assembled using conserved base-pairing rules.
What “directionality” means in replication
DNA strands have chemical polarity because nucleotides are linked through the sugar-phosphate backbone between the 5' phosphate and the 3' hydroxyl on deoxyribose. This polarity is written as 5' → 3'.
Key directionality rule: synthesis is 5? to 3?
The syllabus emphasises that new DNA strands are synthesised in the 5? to 3? direction. Mechanistically, the replicating enzyme adds each incoming nucleotide to the 3' end of the growing strand (to the free 3' hydroxyl).
New strand grows by extension at its 3' end
Backbone forms as nucleotides are joined into a continuous polymer
Energy for joining comes from the incoming nucleotide (as it is incorporated)
Template reading direction
Because the new strand must be built 5' → 3', the template strand is read in the opposite direction:
Template strand is read 3' → 5'
New complementary strand is synthesised 5' → 3'
This antiparallel relationship ensures that each base in the template guides placement of a complementary base in the new strand.
Overview of how replication proceeds along DNA
Replication does not copy an entire chromosome from one end in a single pass. Instead, copying occurs at dynamic regions where the double helix is locally opened so each strand can serve as a template.
Replication proceeds from origins
Replication begins at specific DNA sites called origins of replication, where replication machinery assembles and DNA is opened to expose templates.

Replication bubble diagram illustrating bidirectional replication starting at an origin, producing two replication forks that move in opposite directions. The 5' and 3' labels clarify why one strand is synthesized continuously (leading) while the other is synthesized discontinuously as Okazaki fragments (lagging), even though all new DNA is made 5' → 3'. Source
At an origin, replication typically proceeds in both directions along the DNA
This produces expanding regions of copied DNA as replication continues
Replication forks and the replication bubble
Local opening of DNA creates a replication bubble with two ends, each forming a replication fork (the Y-shaped region where new DNA is being made).

Replication fork structure showing continuous synthesis on the leading strand and discontinuous synthesis on the lagging strand via Okazaki fragments. The labeled enzymes and strand orientations connect the 5' → 3' synthesis rule to the physical organization of replication machinery at the fork. Source
Each fork moves away from the origin as copying progresses
At each fork, both parental strands are being copied into new complementary strands
Coordinating semiconservative copying with directionality
At every fork:
Each parental strand serves as a template
Each daughter DNA molecule will end up with:
one parental strand
one new strand synthesised 5? → 3?
The universal 5' → 3' synthesis constraint is a central organizing principle for understanding replication as a whole, because it dictates how each template can be copied as the fork advances.
Why the 5' to 3' rule matters for inheritance
Because replication is semiconservative, each daughter molecule retains one original strand. This provides a direct molecular basis for genetic continuity:
Base sequence information in a parental strand is preserved
Complementary base pairing enables accurate copying into a new strand
The result is two DNA molecules with the same genetic information content (assuming no errors), ready to be distributed during cell division
FAQ
Polymerisation chemistry requires attachment to a free 3' hydroxyl group to form the next phosphodiester bond. Enzyme active sites are adapted to extend only from the 3' end, enforcing 5' → 3' synthesis.
Starting at an origin, two forks move in opposite directions, so two regions are copied at once. With many origins (especially in eukaryotes), multiple bubbles form, greatly increasing parallel copying.
Origin positions are specified by DNA sequence features and local DNA structure that are recognised by initiator proteins. In eukaryotes, origin usage is also influenced by chromatin accessibility and cell type.
Continuity means the genome is reliably passed on generation to generation. Small error rates can still occur, but the overall process preserves the same genetic instructions closely enough for normal inheritance.
You can differentially label “old” versus “new” DNA using distinct nucleotide isotopes over generations, then separate DNA by density to show hybrid molecules form after one replication cycle.
Practice Questions
State what is meant by semiconservative DNA replication. (2 marks)
Each new DNA molecule contains one original/parental strand (1)
Each new DNA molecule contains one newly synthesised strand (1)
Explain how strand polarity leads to DNA being synthesised only in the 5' to 3' direction during replication, and how this maintains genetic continuity. (5 marks)
DNA strands have polarity with distinct 5' and 3' ends (1)
New nucleotides are added to the 3' end of the growing strand (1)
Therefore the new strand elongates in the 5' to 3' direction (1)
Each parental strand acts as a template for complementary base pairing (1)
Semiconservative outcome: each daughter DNA contains one parental and one new strand, maintaining hereditary information between generations (1)
